2020

Šponer, Judit E.; Mohammadi, Elmira; Petera, Lukáš; Saeidfirozeh, Homa; Knížek, Antonín; Kubelík, Petr; Krůs, Miroslav; Juha, Libor; Civiš, Svatopluk; Coulon, Rémi; Malina, Ondřej; Ugolotti, Juri; Václav, Ranc; Otyepka, Michal; Šponer, Jiří; Ferus, Martin; Dudzak, Roman: Formic acid, a ubiquitous but overlooked component of the early Earth atmosphere. .In: Chem. Eur. J., 26 (52), pp. 12075-12080, 2020.

Seelajaroen, Hathaichanok; Bakandritsos, Aristides; Otyepka, Michal; Zbořil, Radek; Sariciftci, Niyazi Serdar: Immobilized Enzymes on Graphene as Nanobiocatalyst. .In: ACS Appl. Mater. Interfaces, 12 (1), pp. 250-259, 2020.

Bouša, Daniel; Otyepková, Eva; Lazar, Petr; Otyepka, Michal; Sofer, Zdeněk: Surface Energy of Black Phosphorus Alloys with Arsenic. .In: ChemNanoMat, 6 (5), pp. 821-826, 2020.

Černý, Miroslav; Petruš, Josef; Kučera, František; Pavliňáková, Veronika; Kupka, Vojtěch; Poláček, Petr; Chamradová, Ivana: A new approach to the structure–properties relationship evaluation for porous polymer composites. .In: SN Appl. Sci., 2 , pp. 640, 2020.

Alechinsky, Louise; Favreau, Frederic; Čechová, Petra; Inal, Sofiane; Faye, Pierre-Antoine; Ory, Cecile; Thuillier, Raphaël; Barrou, Benoit; Trouillas, Patrick; Guillard, Jerome; Hauet, Thierry: Tannic Acid Improves Renal Function Recovery after Renal Warm Ischemia–Reperfusion in a Rat Model. .In: Biomolecules, 10 (3), pp. 439, 2020.

Langer, Rostislav; Fako, Edvin; Blonski, Piotr; Vavrečka, Miroslav; Bakandritsos, Aristides; Otyepka, Michal; López, Núria: Anchoring of single-platinum-adatoms on cyanographene: Experiment and theory. .In: Appl. Mater. Today, 18 , pp. 100462, 2020.

Zaoralová, Dagmar; Hrubý, Vítězslav; Šedajová, Veronika; Mach, Radim; Kupka, Vojtěch; Ugolotti, Juri; Bakandritsos, Aristides; Medved, Miroslav; Otyepka, Michal: Tunable Synthesis of Nitrogen Doped Graphene from Fluorographene under Mild Conditions. .In: ACS Sustainable Chem. Eng., 8 (12), pp. 4764-4772, 2020.

Senthamarai, Thirusangumurugan; Chandrashekhar, Vishwas G.; Gawande, Manoj B.; Kalevaru, Narayana V.; Zbořil, Radek; Kamer, Paul C. J.; Jagadeesh, Rajenahally V.; Beller, Matthias: Ultra-small cobalt nanoparticles from molecularly-defined Co–salen complexes for catalytic synthesis of amines. .In: Chem. Sci., 11 , pp. 2973-2981, 2020.

Paloncýová, Markéta; Tornmalm, Johan; Sen, Saptaswa; Piguet, Joachim; Widengren, Jerker; Knippenberg, Stefan: The Photoisomerization of DiD: Molecular Dynamics Calculations Reveal the Influence of the Tail Lengths. .In: J. Phys. Chem. C, 124 (10), pp. 5829-5837, 2020.

Goswami, Anandarup; Kadam, Ravishankar G.; Tuček, Jiří; Sofer, Zdeněk; Bouša, Daniel; Varma, Rajender S; Gawande, Manoj B.; Zbořil, Radek: Fe(0)-embedded thermally reduced graphene oxide as efficient nanocatalyst for reduction of nitro compounds to amines. .In: Chem. Eng. J., 382 , pp. 122469, 2020.

Kouloumpis, Antonios; Chronopoulos, Demetrios D.; Potsi, Georgia; Pykal, Martin; Vlček, Jakub; Scheibe, Magdalena; Otyepka, Michal: One‐step synthesis of Janus fluorographene derivatives. .In: Chem. Eur. J., 26 (29), pp. 6518-6524, 2020.

Mallada, Benjamin; Edalatmanesh, Shayan; Lazar, Petr; Redondo, Jesus; Gallardo, Aurelio; Zbořil, Radek; Jelínek, Pavel; Švec, Martin; Torre, Bruno: Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene .In: ACS Sustainable Chem. Eng., 8 (8), pp. 3437-3444, 2020.

Antonatos, Nikolas; Mazánek, Vlastimil; Lazar, Petr; Sturala, Jiří; Sofer, Zdeněk: Acetonitrile-assisted exfoliation of layered grey and black arsenic: contrasting properties. .In: Nanoscale Adv., 2 , pp. 1282-1289, 2020.

Chronopoulos, Demetrios D.; Medved, Miroslav; Potsi, Georgia; Tomanec, Ondřej; Scheibe, Magdalena; Otyepka, Michal: Tunable one-step double functionalization of graphene based on fluorographene chemistry. .In: Chem. Commun., 56 , pp. 1936-1939, 2020.

Gawande, Manoj B.; Fornasiero, Paolo; Zbořil, Radek: Carbon-Based Single-Atom Catalysts for Advanced Applications. .In: ACS Catal., 10 (3), pp. 2231-2259, 2020.

Mlýnský, Vojtěch; Kührová, Petra; Kühr, Tomáš; Otyepka, Michal; Bussi, Giovanni; Banáš, Pavel; Šponer, Jiří: Fine-Tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides. .In: J. Chem. Theory Comput., 16 (6), pp. 3936-3946, 2020.

Reuillard, Bertrand; Blanco, Matías; Calvillo, Laura; Coutard, Nathan; Ghedjatti, Ahmed; Chenevier, Pascale; Agnoli, Stefano; Otyepka, Michal; Granozzi, Gaetano; Artero, Vincent: Noncovalent Integration of a Bioinspired Ni Catalyst to Graphene Acid for Reversible Electrocatalytic Hydrogen Oxidation. .In: ACS Appl. Mater. Interfaces, 12 (5), pp. 5805-5811, 2020.

Manna, Debashree; Lo, Rabindranath; Hobza, Pavel: Spin modification of iron(ii) complexes via covalent (dative) and dispersion guided non-covalent bonding with N-heterocyclic carbenes: DFT, DLPNO-CCSD(T) and MCSCF studies. .In: Dalton Trans., 49 (1), pp. 164-170, 2020.

Paloncýová, Markéta; Aniander, Gustav; Larsson, Emma; Knippenberg, Stefan: Cyanine dyes with tail length asymmetry enhance photoselection: A multiscale study on DiD probes in a liquid disordered membrane. .In: Spectrochim. Acta, Part A, 224 , pp. 117329, 2020.

Šlachtová, Veronika; Šebela, Marek; Torfs, Eveline; oorts, Lauren; Cappoen, Davie; Berka, Karel; Bazgier, Václav; Brulíková, Lucie: Novel thiazolidinedione-hydroxamates as inhibitors of Mycobacterium tuberculosis virulence factor Zmp1. .In: Eur. J. Med. Chem., 185 , pp. 111812, 2020.

2019

Lapčík, Lubomír; Vašina, Martin; Lapčíková, Barbora; Hui, David; Otyepková, Eva; Greenwood, Richard W.; Waters, Kristian E.; Vlček, Jakub: Materials characterization of advanced fillers for composites engineering applications. .In: Nanotechnol. Rev., 8 (1), pp. 503-512, 2019.

Špičáková, Alena; Bazgier, Václav; Skálová, L; Otyepka, Michal; Anzenbacher, Pavel: Beta-caryophyllene oxide and trans-nerolidol affect enzyme activity of CYP3A4-in vitro and in silico studies. .In: Physiol. Res., 68 , pp. S51-S58, 2019.

Lenarda, Anna; Bakandritsos, Aristides; Bevilacqua, Manuela; Tavagnacco, Claudio; Melchionna, Michele; Naldoni, Alberto; Steklý, Tomáš; Otyepka, Michal; Zbořil, Radek; Fornasiero, Paolo: Selective Functionalization Blended with Scaffold Conductivity in Graphene Acid Promotes H2O2 Electrochemical Sensing. .In: ACS Omega, 4 (22), pp. 19944-19952, 2019.

Trávníčková, Eva; Mikula, Přemysl; Opršál, Jakub; Boháčová, Marie; Kubáč, Lubomír; Kimmer, Dušan; Soukupová, Jana; Bittner, Michal: Resazurin assay for assessment of antimicrobial properties of electrospun nanofiber filtration membranes. .In: AMB Express, 9 , pp. 183, 2019.

Otyepková, Eva; Gabriel, Roman: Crystalline Salts of Obeticholic Acid. .In: Chem. Listy, 113 (7), pp. 434-437, 2019.

Petr, Martin; Jakubec, Petr; Ranc, Vaclav; Šedajová, Veronika; Langer, Rostislav; Medved, Miroslav; Blonski, Piotr; Kašlík, Josef; Kupka, Vojtěch; Otyepka, Michal; Zbořil, Radek: Thermally reduced fluorographenes as efficient electrode materials for supercapacitors. .In: Nanoscale, 11 , pp. 21364-21375, 2019.

Papadakis, Ioannis; Kyrginas, Dimitrios; Stathis, Aristeidis; Couris, Stelios; Potsi, Georgia; Bourlinos, Athanasios B.; Tomanec, Ondřej; Otyepka, Michal; Zbořil, Radek: Large Enhancement of the Nonlinear Optical Response of Fluorographene by Chemical Functionalization: The Case of Diethyl-amino-fluorographene. .In: J. Phys. Chem. C, 123 (42), pp. 25856-25862, 2019.

Deletraz, Anals; Zeamari, Kamal; Meo, Florent Di; Fabre, Paul-Louis; Reybier, Karine; Trouillas, Patrick; Tuccio, Beatrice; Durand, Gregory: Reactivities of MeO-substituted PBN-type nitrones. .In: New J. Chem., 43 (39), pp. 15754-15762, 2019.

Langer, Rostislav; Zaoralová, Dagmar; Medved, Miroslav; Banáš, Pavel; Blonski, Piotr; Otyepka, Michal: Variability of C–F Bonds Governs the Formation of Specific Structural Motifs in Fluorinated Graphenes. .In: J. Phys. Chem. C, 123 (45), pp. 27896-27903, 2019.

Talande, Smita; Bakandritsos, Aristides; Jakubec, Petr; Malina, Ondřej; Zbořil, Radek; Tuček, Jiří: Densely Functionalized Cyanographene Bypasses Aqueous Electrolytes and Synthetic Limitations Toward Seamless Graphene/β‐FeOOH Hybrids for Supercapacitors. .In: Adv. Funct. Mater., 29 (51), pp. 1906998, 2019.

Parente, Alexis; Meo, Florent Di; Lapeyronie, Eric; Mansi, Montasir Al; Delourme, Didier; Pelissier, Patrick; Bremaud, Laure; Trouillas, Patrick; Blanquet, Veronique: GASP-1 and GASP-2, two closely structurally related proteins with a functional duality in antitrypsin inhibition specificity: a mechanistic point of view. .In: FEBS J., 287 (5), pp. 909-924, 2019.

Berka, Pavel; Stránská, Denisa; Semecký, Vladimír; Berka, Karel; Doležal, Pavel: In vitro testing of flash-frozen sublingual membranes for storage and reproducible permeability studies of macromolecular drugs from solution or nanofiber mats. .In: Int. J. Pharm., 572 , pp. 118711, 2019.

Varadi, Mihaly; Berrisford, John; Deshpande, Mandar; Nair, Sreenath S.; Gutmanas, Aleksandras; Berka, Karel; ...,; Koča, Jaroslav; ...,; Velankar, Sameer: PDBe-KB: a community-driven resource for structural and functional annotations. .In: Nucleic Acids Res., pp. gkz853, 2019.

McNally, Michael James; Galinis, Gediminas; Youle, Oliver; Petr, Martin; Prucek, Robert; Machala, Libor; Haeften, Klaus: Silver nanoparticles by atomic vapour deposition on an alcohol micro-jet. .In: Nanoscale Adv., 1 (10), pp. 4041-4051, 2019.

Manzanares-Palenzuela, C. Lorena; Pourrahimi, Amir M.; Gonzalez-Julian, J; Sofer, Zdeněk; Pykal, Martin; Otyepka, Michal; Pumera, Martin: Interaction of single- and double-stranded DNA with multilayer MXene by fluorescence spectroscopy and molecular dynamics simulation. .In: Chem. Sci., 10 , pp. 10010-10017, 2019.

Suddala, Krishna C.; Price, Ian R; Dandpat, Shiba S; Janeček, Michal; Kührová, Petra; Šponer, Jiří; Banáš, Pavel; Ke, Ailong; Walter, Nils G.: Local-to-global signal transduction at the core of a Mn2+ sensing riboswitch. .In: Nat. Commun., 10 , pp. 4304, 2019.

Šponer, Judit E; Šponer, Jiří; Mauro, Ernesto Di: Structural and Energetic Compatibility: The Driving Principles of Molecular Evolution. .In: Astrobiol, 19 (9), pp. 1117-1122, 2019.

Malina, Tomáš; Maršálková, Eliška; Holá, Kateřina; Tuček, Jiří; Scheibe, Magdalena; Zbořil, Radek; Maršálek, Blahoš: Toxicity of graphene oxide against algae and cyanobacteria: Nanoblade-morphology-induced mechanical injury and self-protection mechanism. .In: Carbon, 155 , pp. 386-396, 2019.

Malina, Tomáš; Poláková, Kateřina; Skopalík, Josef; Milotová, Věra; Holá, Kateřina; Havrdová, Markéta; Bartoň, Kateřina Tománková; Čmiel, Vratislav; Šefc, Luděk; Zbořil, Radek: Carbon dots for in vivo fluorescence imaging of adipose tissue-derived mesenchymal stromal cells. .In: Carbon, 152 , pp. 434-443, 2019.

Blanco, Matías; Mosconi, Dario; Otyepka, Michal; Medved, Miroslav; Aristides, Bakandritsos; Agnoli, Stefano; Granozzi, Gaetano: Combined high degree of carboxylation and electronic conduction in graphene acid set new limits for metal free catalysis in alcohol oxidation. .In: Chem. Sci., 10 , pp. 9438-9445, 2019.

Jayaramulu, Kolleboyina; Dubal, Deepak P.; Schneemann, Andreas; Ranc, Vaclav; Perez-Reyes, Cecilia; Straska, Jana; Kment, Štěpán; Otyepka, Michal; Fischer, Roland A.; Zbořil, Radek: Shape-Assisted 2D MOF/Graphene Derived Hybrids as Exceptional Lithium-Ion Battery Electrodes. .In: Adv. Funct. Mater., 29 (38), pp. 1902539, 2019.

Stadlbauer, Petr; Kührová, Petra; Vicherek, Lukáš; Banáš, Pavel; Otyepka, Michal; Trantírek, Lukáš; Šponer, Jiří: Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes. .In: Nucleic Acids Res., 47 (14), pp. 7276–7293, 2019.

Luxa, Jan; Marvan, Petr; Lazar, Petr; Sofer, Zdeněk: Chalcogenide vacancies drive the electrocatalytic performance of rhenium dichalcogenides. .In: Nanoscale, 11 (31), pp. 14684-14690, 2019.

Eyrilmez, Saltuk M.; Kopruluoglu, Cemal; Řezáč, Jan; Hobza, Pavel: Impressive Enrichment of Semiempirical Quantum Mechanics-Based Scoring Function: HSP90 Protein with 4541 Inhibitors and Decoys. .In: ChemPhysChem, 20 (21), pp. 2759-2766, 2019.

Lo, Rabindranath; Manna, Debashree; Zbořil, Radek; Nachtigallová, Dana; Hobza, Pavel: Spin Crossover in Iron(II) Porphyrazine Induced by Noncovalent Interactions Combined with Hybridization of Iron(II) Porphyrazine and Ligand's Orbitals: CASPT2, CCSD(T), and DFT Studies. .In: J. Phys. Chem. C, 123 (37), pp. J. Phys. Chem. C, 2019.

Potsi, Georgia; Bourlinos, Athanasios B.; Mouselimis, Vasilios; Poláková, Kateřina; Chalmpes, Nikolaos; Gournis, Dimitrios; Kalytchuk, Sergii; Tomanec, Ondřej; Blonski, Piotr; Medved, Miroslav; Lazar, Petr; Otyepka, Michal; Zbořil, Radek: Intrinsic photoluminescence of amine-functionalized graphene derivatives for bioimaging applications. .In: Appl. Mater. Today, 17 , pp. 112-122, 2019.

Gorecka, Karolina Maria; Krepl, Miroslav; Szlachcic, Aleksandra; Poznanski, Jaroslaw; Šponer, Jiří; Nowotny, Marcin: RuvC uses dynamic probing of the Holliday junction to achieve sequence specificity and efficient resolution. .In: Nat. Commun., 10 , pp. 4102, 2019.

Zoppellaro, Giorgio; Bakandritsos, Aristides; Tuček, Jiří; Blonski, Piotr; Susi, Toma; Lazar, Petr; Baďura, Zdeněk; Steklý, Tomáš; Opletalová, Ariana; Otyepka, Michal; Zbořil, Radek: Microwave Energy Drives “On–Off–On” Spin‐Switch Behavior in Nitrogen‐Doped Graphene. .In: Adv. Funct. Mater., 31 (37), pp. 1902587, 2019.

Socrier, Larissa; Rosselin, Mariea; Giraldoa, Ana Milena Gomez; Chantemargu, Benjamin; Meo, Florent Di; Trouillas, Patrick; Durand, Gregory; Morandat, Sandrine: Nitrone-Trolox conjugate as an inhibitor of lipid oxidation: Towards synergistic antioxidant effects. .In: Biochim. Biophys. Acta, Biomembr., 1861 (8), pp. 1489-1501, 2019.

Blanco, Matías; Mosconi, Dario; Tubaro, Cristina; Biffis, Andrea; Badocco, Denis; Pastore, Paolo; Otyepka, Michal; Bakandritsos, Aristides; Liu, Zhibo; Ren, Wencai; Agnoli, Stefano; Granozzi, Gaetano: Palladium nanoparticles supported on graphene acid: a stable and eco-friendly bifunctional C–C homo- and cross-coupling catalyst. .In: Green Chem., 21 , pp. 5238-5247, 2019.